Phoenix
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Phoenix
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  • Overview: module code
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All modules for which code is available

  • abc
  • phe.annotations
    • phe.annotations.CoverageAnnotator
  • phe.mapping
    • phe.mapping.BWAMapper
    • phe.mapping.Bowtie2Mapper
    • phe.mapping.mapping_factory
  • phe.metadata
  • phe.utils
    • phe.utils.reader
  • phe.variant
    • phe.variant.GATKVariantCaller
    • phe.variant.MPileupVariantCaller
    • phe.variant.variant_factory
  • phe.variant_filters
    • phe.variant_filters.ADFilter
    • phe.variant_filters.DP4Filter
    • phe.variant_filters.DepthFilter
    • phe.variant_filters.GQFilter
    • phe.variant_filters.GTFilter
    • phe.variant_filters.MQ0FFilter
    • phe.variant_filters.MQ0Filter
    • phe.variant_filters.MQFilter
    • phe.variant_filters.QualFilter

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