phe.variant_filters.GQFilter module¶

Filter VCF on GQ parameter.

Date:	24 Sep, 2015
Author:	Alex Jironkin

class GQFilter(args)[source]¶

Bases: phe.variant_filters.PHEFilterBase

Filter sites by GQ score.

Methods

`__call__`(record)	Filter a `vcf.model._Record`.
`call_concensus`(record)
`customize_parser`(parser)
`decode`(filter_id)	Decode name of filter.
`filter_name`()	Create filter names by their parameter separated by magic.
`get_config`()	This is used for reconstructing filter.
`is_gap`()
`is_n`()
`is_uncallable`(record)	Filter a `vcf.model._Record`.
`short_desc`()