phe.variant_filters.QualFilter module¶
Filter VCF on GQ parameter.
Date: | 24 Sep, 2015 |
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Author: | Alex Jironkin |
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class
QualFilter
(args)[source]¶ Bases:
phe.variant_filters.PHEFilterBase
Filter sites by QUAL score.
Methods
__call__
(record)Filter a vcf.model._Record
.decode
(filter_id)Decode name of filter. filter_name
()Create filter names by their parameter separated by magic. get_config
()This is used for reconstructing filter. is_uncallable
(record)Filter a vcf.model._Record
.call_concensus customize_parser is_gap is_n short_desc -
name
= 'LowSNPQual'¶
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parameter
= 'qual_score'¶
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